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vsclust.INSTALL #72

Closed martin-g closed 11 months ago

martin-g commented 1 year ago 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL vsclust
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’
* installing *source* package ‘vsclust’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++17 -shared -L/usr/local/lib -o vsclust.so RcppExports.o vsclust_algo.o
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: error adding symbols: file in wrong format
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/share/make/shlib.mk:10: vsclust.so] Error 1
ERROR: compilation failed for package ‘vsclust’
* removing ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/vsclust’
* restoring previous ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/vsclust’
martin-g commented 1 year ago

Reported upstream: https://github.com/veitveit/vsclust/issues/8

martin-g commented 11 months ago

https://bioconductor.org/checkResults/3.18/bioc-LATEST/vsclust/kunpeng2-checksrc.html builds fine. It has only check warnings