Open fmazzarotto opened 10 months ago
Dear @fmazzarotto ,
Thank you for using CMplot. Please try the latest version on GitHub (source the online script in R), the parameter "axis.cex" can work on the size of labels, and sorry that the positions are fixed, it's not available to adjust the position of labels for users. Regarding the gray signal lines, CMplot only draws the lines for the points which exceed the smallest threshold, thus if you would like to highlight all the signals, just use one threshold (5E-6) instead.
Best, Lilin
The code that I used is the following:
CMplot(sumstats_clean,plot.type="c",r=0.5,H=2,cex=0.35,threshold=c(5E-8,5E-6),threshold.col=c("red","darkorange3"),amplify=F,highlight=c("rs73125698","rs637963","rs59515125","rs1406447","rs11983675","rs12606558","rs12954992","rs7069590","rs1789250","rs11250166","rs12495100","rs7118149","rs7948935","rs9588277","rs12586818","rs7087272"),outward=T,cir.chr.h=0.15,file="jpg",dpi=300,chr.labels=seq(1,22),file.name = "test_r0.5_H2_cex0.35_thres")
Thanks very much Best regards