Open elzadgeorge opened 5 months ago
CMplot(df_whole, plot.type="m",type = "p", LOG10 = TRUE,multracks=TRUE,threshold=c(5e-8,1e-5),threshold.lty=c(1,2), threshold.lwd=c(1,1), threshold.col=c("red","blue"), amplify=TRUE, signal.col= c("red","green"), signal.cex=1, file="jpg",file.name="",dpi=300,file.output=TRUE, verbose=TRUE, highlight=SNPs, highlight.text=SNPs, highlight.text.cex=1.4)
Please check if the format of your data 'df_whole' is consistent with the requirement.
Thank you! Obtained the plot after rearranging the columns based on the requirement!!!!!
CMplot(df_whole, plot.type="m",type = "p", LOG10 = TRUE,multracks=TRUE,threshold=c(5e-8,1e-5),threshold.lty=c(1,2), threshold.lwd=c(1,1), threshold.col=c("red","blue"), amplify=TRUE, signal.col= c("red","green"), signal.cex=1, file="jpg",file.name="",dpi=300,file.output=TRUE, verbose=TRUE, highlight=SNPs, highlight.text=SNPs, highlight.text.cex=1.4)