search

YinLiLin / CMplot

📊 Circular and Rectangular Manhattan Plot
499 stars 111 forks source link

Run Q-Q plot cause many time #93

Closed DamienTan closed 1 year ago

DamienTan commented 1 year ago

Hi, Lilin When I used CMplot to generate a Q-Q plot, it spended a lot of time (more than one day) and did not output the result file. How I should do to fix this problem? Here is my command:

CMplot(d1,plot.type="q",conf.int.col=NULL,box=TRUE,file="jpg",memo="Q-Q plot",dpi=600,file.output=TRUE,verbose=TRUE)

and d1 

CHR SNP BP  P
1   chr1:10439_AC/A 10439   0.8001
1   chr1:12807_C/T  12807   0.4605
1   chr1:13273_G/C  13273   0.5556
1   chr1:13417_C/CGAGA  13417   0.3573
1   chr1:13649_G/C  13649   0.3529

Best, Damien

YinLiLin commented 1 year ago

Hi Damien,

The format of the data you provided is not fully consistent with the requirements of CMplot. The order of columns for the required format should be SNP, CHR, BP, P. Please adjust and have a try again.

Best, LL

DamienTan commented 1 year ago

Hi Lilin, This problem has been solved following your suggestion. Appreciate your timely help.

Best, Damien