Segmentation Fault on Intel MacPro

GoogleCodeExporter commented 9 years ago

Please complete the following lines...

Application Version: 5.0.2 Serial
SVN Revision Number: 977
Compile Date: Mon, 12 Nov 2007
Operating System: Mac OS X 10.5.1 (9B18), Darwin 9.1.0

Describe details of the issue below: FDS input file (1.4 million cells)
generates a segmentation fault and will not run. The same input file does
run using 5.0.2 Serial WinXP version.

Hardware Overview:

  Model Name:               Mac Pro
  Model Identifier:     MacPro1,1
  Processor Name:       Dual-Core Intel Xeon
  Processor Speed:      3 GHz
  Number Of Processors:     2
  Total Number Of Cores:    4
  L2 Cache (per processor): 4 MB
  Memory:                   12 GB
  Bus Speed:                1.33 GHz

Original issue reported on code.google.com by john.e.b...@nasa.gov on 3 Dec 2007 at 8:40

GoogleCodeExporter commented 9 years ago

Please attach the input file to this issue.  You can do so by going to the 
issue 
using the link in the email update you received and clicking in the add a 
comment 
text box.  You will then get a link to attach a file.

Original comment by drjfloyd on 3 Dec 2007 at 9:11

Changed state: MoreInfo

GoogleCodeExporter commented 9 years ago

Please try the attached binary...

Original comment by bryanwkl...@gmail.com on 3 Dec 2007 at 9:55

Attachments:

fds5_osx_intel_64.zip

GoogleCodeExporter commented 9 years ago

Fire Dynamics Simulator (fds5_osx_intel_64)

 Compilation Date : Thu, 29 Nov 2007
 Version          : 5.0.2 Serial
 SVN Revision No. : 1037
 Operating System : Mac OS X 10.5.1 (9B18), Darwin 9.1.0

I tried the new 64-bit binary over the weekend using 3 variants of my input 
file.

1) 2,764,800 cells (single mesh), still running (timestep 14500)

2) 1,382,400 cells (mesh1), 1,382,400 cells (mesh2), segmentation fault after
timestamp 1100

3) 777,600 cells (mesh1), 1,536,000 cells (mesh2), segmentation fault after 
timestamp 900

For all cases, Activity Monitor showed 1 thread, ~2 GB real memory, ~5GB 
virtual memory.

Original comment by john.e.b...@nasa.gov on 10 Dec 2007 at 4:17

GoogleCodeExporter commented 9 years ago

Try attached 32bit versions.

Original comment by bryanwkl...@gmail.com on 10 Dec 2007 at 10:29

Attachments:

FDS_5.0.3_Files.zip

GoogleCodeExporter commented 9 years ago

Fire Dynamics Simulator (fds_osx_intel)

 Compilation Date : Wed, 05 Dec 2007
 Version          : 5.0.3 Serial
 SVN Revision No. : 1068

The new 32 bit build, with the updated Intel compiler, appears to be working 
for case
1 from above (time step 3800). I will need your help compiling MPI in order to 
test
the 32 bit parallel build.

Original comment by john.e.b...@nasa.gov on 11 Dec 2007 at 8:18

GoogleCodeExporter commented 9 years ago

Some interesting stats comparing 64 bit (5.0.2 Serial, 1037) and 32 bit (5.0.3
Serial, 1068) for case1.

 Time Step      1   December  7, 2007  17:25:05
       ----------------------------------------------
       CPU/step:    11.782 s, Total CPU:     11.78 s
       Time step:  0.02011 s, Total time:     0.02 s
       Max CFL number:  0.19E-01 at ( 76, 87, 65)
       Max divergence:  0.67E-15 at ( 70, 54,159)
       Min divergence: -0.67E-15 at ( 72,136, 14)

Time Step   7200   December  9, 2007  02:19:42
       ----------------------------------------------
       CPU/step:    12.047 s, Total CPU:     24.68 hr
       Time step:  0.00135 s, Total time:    10.33 s
       Max CFL number:  0.98E+00 at ( 66, 44,130)
       Max divergence:  0.55E+01 at ( 24,119, 72)
       Min divergence: -0.10E+02 at ( 19,122, 72)
       No. of Lagrangian Particles:           818
       Total Heat Release Rate:              2.003 kW
       Radiation Loss to Boundaries:         1.189 kW

Time Step      1   December 10, 2007  18:16:25
       ----------------------------------------------
       CPU/step:    15.834 s, Total CPU:     15.83 s
       Time step:  0.02011 s, Total time:     0.02 s
       Max CFL number:  0.19E-01 at ( 76, 87, 65)
       Max divergence:  0.67E-15 at ( 70, 54,159)
       Min divergence: -0.67E-15 at ( 72,136, 14)

Time Step   7200   December 12, 2007  10:06:54
       ----------------------------------------------
       CPU/step:    15.575 s, Total CPU:     30.96 hr
       Time step:  0.00135 s, Total time:    10.33 s
       Max CFL number:  0.98E+00 at ( 79, 40,110)
       Max divergence:  0.12E+02 at ( 16,126, 72)
       Min divergence: -0.53E+01 at ( 16,131, 72)
       No. of Lagrangian Particles:           833
       Total Heat Release Rate:              2.552 kW
       Radiation Loss to Boundaries:         1.512 kW

Original comment by john.e.b...@nasa.gov on 12 Dec 2007 at 8:34

GoogleCodeExporter commented 9 years ago

Please try the new 5.1.0 release, it includes both 32 and 64 bit versions.
I am not sure how well 64bit MPI version is working, please start a seperate 
thread
if it does not work.

Original comment by bryanwkl...@gmail.com on 8 Jan 2008 at 10:49

Changed state: Started
Added labels: OpSys-OSX_Intel, Usability

GoogleCodeExporter commented 9 years ago

I would like to try the 32/64 bit MPI versions, although I am not entirely 
clear how to do this on a multi-core 
machine. Please advise.

Original comment by john.e.b...@nasa.gov on 9 Jan 2008 at 9:45

GoogleCodeExporter commented 9 years ago

I will put together a write up for this process and post it as a Wiki when it is
finished.  I will also notify you through this issue posting.

Original comment by bryanwkl...@gmail.com on 15 Jan 2008 at 12:31

GoogleCodeExporter commented 9 years ago

A follow-up to Comment 7. I tried the new 32/64 bit 5.1.0 release using case 1 
(see Comment 3) with the 
following results.

Fire Dynamics Simulator (fds_osx_intel_32)
  Compilation Date : Tue, 08 Jan 2008
  Version                  : 5.1.0 Serial
  SVN Revision No. : 1162
Time step 6979, 10s, successful

Fire Dynamics Simulator (fds_osx_intel_64)
  Compilation Date : Tue, 08 Jan 2008
  Version                  : 5.1.0 Serial
  SVN Revision No. : 1162
Time step 600, 1.41s, error (174) segmentation fault

Not sure why the previous 64 bit build worked (see comment 3) and this one 
didn't.

Original comment by john.e.b...@nasa.gov on 24 Jan 2008 at 4:49

GoogleCodeExporter commented 9 years ago

Have you tried the 5.1.1 version posted yesterday?
Please confirm that you get the Seg Fault with this one as well.

-Bryan

Original comment by Ziv...@gmail.com on 24 Jan 2008 at 9:08

GoogleCodeExporter commented 9 years ago

I tried the new 64 bit 5.1.1 release using case 1 (see Comment 3) with the 
following results.

Fire Dynamics Simulator (fds_osx_intel_64)
  Compilation Date : Mon, 21 Jan 2008
  Version                  : 5.1.1 Serial
  SVN Revision No. : 1217
Time step 600, 1.41s, error (174) segmentation fault

Original comment by john.e.b...@nasa.gov on 28 Jan 2008 at 4:33

GoogleCodeExporter commented 9 years ago

What is the status of this thread?

Original comment by mcgra...@gmail.com on 22 Jul 2008 at 8:44

GoogleCodeExporter commented 9 years ago

We will retry with 5.2 release and latest versions of Intel compilers.

Original comment by Ziv...@gmail.com on 22 Jul 2008 at 9:12

GoogleCodeExporter commented 9 years ago

Original comment by bryanwkl...@gmail.com on 28 Aug 2008 at 5:06

Changed state: OnHold

GoogleCodeExporter commented 9 years ago

I got similar errors on my Linux-Workstation (2*QuadCore) with a self-compiled
version of fds (releases of 5.1.6 to present). As far as I now now, the compiler
options are the key to this error... I recompiled fds 5.2.1 with additional 
options
and one case is running for much longer than ever.

Original comment by simon.f...@hbi.ch on 14 Oct 2008 at 6:16

GoogleCodeExporter commented 9 years ago

I got similar errors on my Linux-Workstation (2*QuadCore) with a self-compiled
version of fds (releases of 5.1.6 to present). As far as I now now, the compiler
options are the key to this error... I recompiled fds with additional compiler
options and the first test-case is still running...

Please see http://code.google.com/p/fds-smv/issues/detail?id=474

Original comment by simon.f...@hbi.ch on 14 Oct 2008 at 9:17

GoogleCodeExporter commented 9 years ago

Thank you for the tip... I am testing this flag out with the 64bit OS X builds 
and
hopefully it will help there too.

Original comment by bryanwkl...@gmail.com on 22 Oct 2008 at 12:02

GoogleCodeExporter commented 9 years ago

Could you manage to fix your problem?

Original comment by simon.f...@hbi.ch on 24 Oct 2008 at 11:41

GoogleCodeExporter commented 9 years ago

bryan will respond when he gets back to the office which should be sometime the 
week
of november 3rd

Original comment by gfor...@gmail.com on 24 Oct 2008 at 11:53

GoogleCodeExporter commented 9 years ago

Bryan and I worked on this issue Wednesday (10/22/08) from our homes using 
iChat. He
guided me through the process of compiling OpenMP with the inclusion of 
gfortran. We
still had more to do, but it was late so we stopped for the night. I noticed an 
email
(home address) this morning that had an attachment which included the remaining
libraries and binaries necessary for 64 bit parallel fds. He said it worked for 
him
using my input file with 4 meshes. I will try it out this weekend and report 
back.

Original comment by john.e.b...@nasa.gov on 24 Oct 2008 at 6:21

GoogleCodeExporter commented 9 years ago

[deleted comment]

GoogleCodeExporter commented 9 years ago

I am back again and will be looking into the newest errors.

John, can you post them here just to keep track for others who may encounter 
this issue.

-Bryan

Original comment by bryanwkl...@gmail.com on 3 Nov 2008 at 9:32

Changed state: Started

GoogleCodeExporter commented 9 years ago

Will contact again for further troubleshooting.

Original comment by bryan%so...@gtempaccount.com on 26 Jan 2009 at 10:03

Added labels: Application-FDS, OpSys-OSX
Removed labels: OpSys-OSX_Intel

GoogleCodeExporter commented 9 years ago

Closing this Issue based on our conversation.

Original comment by bryan%so...@gtempaccount.com on 5 Feb 2009 at 4:41

Changed state: UnVerified

Yinan-Scott-Shi / fds-smv

Segmentation Fault on Intel MacPro #236