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YingZhou001 / Immuannot

Immuological gene typing and annotation for genome assembly
MIT License
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Incomplete GTF information #4

Closed xuxingyubio closed 8 months ago

xuxingyubio commented 8 months ago

Why is it that although DRB1 can be aligned 100%, the information for exon1 and exon2 is not in the GTF file?

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YingZhou001 commented 8 months ago

Could you try to use grep "HLA-DRB1" to see what happen, or just look at the contig "ptg0000041" only?

xuxingyubio commented 8 months ago

Apologies for the confusion, I initially thought that the GTF file was arranged gene by gene. However, upon reviewing the file, it appears to be arranged according to the size of the fourth column. The results indeed include all the exons.

YingZhou001 commented 8 months ago

No Worries, actually thanks for pointing this out. I think it is the software design problem. I will fix this and make it less confused in the next version.