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YiweiNiu / STR_2022

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str LD #1

Open lihaicheng7003 opened 9 months ago

lihaicheng7003 commented 9 months ago

I noticed that you have a script called get_SNP_STR_LD.v2.py for calculating linkage disequilibrium (LD) between str and snp. Could you provide an example format for the str? I happen to be dealing with a similar issue recently.

lihaicheng7003 commented 9 months ago

I'm struggling with the situation where 'STR dosages (sum of the two repeat allele lengths)' are used. In this context, there might be cases like [17,16] and [18,15], where the sums are the same.