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YosefLab / Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
https://cassiopeia-lineage.readthedocs.io/en/latest/
MIT License
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ILPSolver internal nodes naming convention prevents the trees from being converted to newick format #115

Closed richardyz98 closed 3 years ago

richardyz98 commented 3 years ago

Currently, as the end of the solve procedure, the ILPSolver maintains the names of the internal nodes as tuples representing the character vector used in the Steiner solution. These should be changed to the "cassiopeia_internal_node" naming convention adopted by the other solvers.

richardyz98 commented 3 years ago

EDIT (7/30/21 @ 4:30PM PT): This issue was resolved in #119