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YosefLab / Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
https://cassiopeia-lineage.readthedocs.io/en/latest/
MIT License
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SpatialSampler #129

Closed Lioscro closed 2 years ago

Lioscro commented 3 years ago

SpatialSampler implementation. This sampler overlays a grid of "spots" onto the 2D plane on which cells are located, then samples the cell character states based on some capture rate function. Upstream is #123. Once that's merged, this PR will point to master.

codecov[bot] commented 3 years ago

Codecov Report

Merging #129 (2858390) into master (9ff60ed) will decrease coverage by 0.05%. The diff coverage is 98.13%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #129      +/-   ##
==========================================
- Coverage   85.31%   85.26%   -0.06%     
==========================================
  Files          65       66       +1     
  Lines        4434     4541     +107     
==========================================
+ Hits         3783     3872      +89     
- Misses        651      669      +18
Impacted Files Coverage Δ
cassiopeia/simulator/SpatialSampler.py 98.11% <98.11%> (ø)
cassiopeia/simulator/__init__.py 100.00% <100.00%> (ø)
cassiopeia/solver/HybridSolver.py 73.94% <0.00%> (-11.77%) :arrow_down:
cassiopeia/solver/MaxCutGreedySolver.py 93.47% <0.00%> (-4.35%) :arrow_down:

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Lioscro commented 2 years ago

Closing until we actually need something like this.