Closed Lioscro closed 3 years ago
Merging #142 (6d5230e) into master (3b454a7) will increase coverage by
0.44%
. The diff coverage is89.28%
.
@@ Coverage Diff @@
## master #142 +/- ##
==========================================
+ Coverage 86.23% 86.67% +0.44%
==========================================
Files 65 65
Lines 4532 4540 +8
==========================================
+ Hits 3908 3935 +27
+ Misses 624 605 -19
Impacted Files | Coverage Δ | |
---|---|---|
cassiopeia/preprocess/constants.py | 100.00% <ø> (ø) |
|
cassiopeia/preprocess/pipeline.py | 75.93% <82.35%> (+4.92%) |
:arrow_up: |
cassiopeia/preprocess/alignment_utilities.py | 90.00% <100.00%> (+1.25%) |
:arrow_up: |
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Global alignment implementation (#127, #136, #139)
method
argument topp.align_sequences
which can either belocal
(default) orglobal
.pp.alignment_utilities
.Regarding poly-A trimming, I'm not sure if this will be a big issue, but worth discussion.