YosefLab / Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
https://cassiopeia-lineage.readthedocs.io/en/latest/
MIT License
77 stars 24 forks source link

converted str-> Path during iTOL plotting #197

Closed mattjones315 closed 1 year ago

mattjones315 commented 1 year ago

Fixed an issue in adding files to an existing iTOL object raised in #193.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 90.90% and project coverage change: -8.15 :warning:

Comparison is base (feec020) 87.20% compared to head (37a46cc) 79.05%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #197 +/- ## ========================================== - Coverage 87.20% 79.05% -8.15% ========================================== Files 71 85 +14 Lines 5643 7081 +1438 ========================================== + Hits 4921 5598 +677 - Misses 722 1483 +761 ``` | [Impacted Files](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab) | Coverage Δ | | |---|---|---| | [cassiopeia/preprocess/cassiopeia\_preprocess.py](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab#diff-Y2Fzc2lvcGVpYS9wcmVwcm9jZXNzL2Nhc3Npb3BlaWFfcHJlcHJvY2Vzcy5weQ==) | `23.07% <ø> (-1.46%)` | :arrow_down: | | [cassiopeia/preprocess/utilities.py](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab#diff-Y2Fzc2lvcGVpYS9wcmVwcm9jZXNzL3V0aWxpdGllcy5weQ==) | `98.40% <ø> (+1.17%)` | :arrow_up: | | [cassiopeia/plotting/itol\_utilities.py](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab#diff-Y2Fzc2lvcGVpYS9wbG90dGluZy9pdG9sX3V0aWxpdGllcy5weQ==) | `60.12% <50.00%> (+0.24%)` | :arrow_up: | | [cassiopeia/preprocess/doublet\_utils.py](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab#diff-Y2Fzc2lvcGVpYS9wcmVwcm9jZXNzL2RvdWJsZXRfdXRpbHMucHk=) | `100.00% <100.00%> (ø)` | | | [cassiopeia/preprocess/lineage\_utils.py](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab#diff-Y2Fzc2lvcGVpYS9wcmVwcm9jZXNzL2xpbmVhZ2VfdXRpbHMucHk=) | `63.80% <100.00%> (ø)` | | | [cassiopeia/preprocess/pipeline.py](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab#diff-Y2Fzc2lvcGVpYS9wcmVwcm9jZXNzL3BpcGVsaW5lLnB5) | `91.15% <100.00%> (+15.54%)` | :arrow_up: | ... and [15 files with indirect coverage changes](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/197/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab)

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