codecov[bot]
commented
1 year ago Codecov Report
Patch and project coverage have no change.
Comparison is base (
020101f) 79.05% compared to head (c1a224f) 79.05%.
Additional details and impacted files
```diff @@ Coverage Diff @@ ## master #207 +/- ## ======================================= Coverage 79.05% 79.05% ======================================= Files 85 85 Lines 7080 7080 ======================================= Hits 5597 5597 Misses 1483 1483 ``` | [Files Changed](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/207?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab) | Coverage Δ | | |---|---|---| | [cassiopeia/solver/ILPSolver.py](https://app.codecov.io/gh/YosefLab/Cassiopeia/pull/207?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=YosefLab#diff-Y2Fzc2lvcGVpYS9zb2x2ZXIvSUxQU29sdmVyLnB5) | `44.60% <ø> (ø)` | |:umbrella: View full report in Codecov by Sentry.
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With pandas=2.0.2 the character matrix passed by
ILPSolvertoilp_solver_utilities.infer_potential_graph_cythonis not correctly formatted for cython. This patch fixes this bug.===================================================== ERROR: test_simple_potential_graph_inference (main.TestILPSolver)
Traceback (most recent call last): File "test/solver_tests/ilp_solver_test.py", line 119, in test_simple_potential_graph_inference potential_graph = self.ilp_solver.infer_potential_graph( File "/home/wcolgan/miniconda3/envs/tree-env/lib/python3.8/site-packages/cassiopeia/solver/ILPSolver.py", line 307, in infer_potential_graph ilp_solver_utilities.infer_potential_graph_cython( File "cassiopeia/solver/ilp_solver_utilities.pyx", line 21, in cassiopeia.solver.ilp_solver_utilities.infer_potential_graph_cython character_array: str[:, :], ValueError: Does not understand character buffer dtype format string ('w')