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YosefLab / Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
https://cassiopeia-lineage.readthedocs.io/en/latest/
MIT License
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Sequential lineage tracing data simulator #229

Closed colganwi closed 8 months ago

colganwi commented 1 year ago

This PR adds a SequentialLineageTracingDataSimulator class for modeling sequential lineage tracing systems such as the DNA Typewriter described by Choi et al, Nature 2022

codecov[bot] commented 1 year ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (97accd7) 79.58% compared to head (d664390) 79.84%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #229 +/- ## ========================================== + Coverage 79.58% 79.84% +0.25% ========================================== Files 89 90 +1 Lines 8069 8170 +101 ========================================== + Hits 6422 6523 +101 Misses 1647 1647 ```

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