YosefLab / Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
https://cassiopeia-lineage.readthedocs.io/en/latest/
MIT License
77 stars 24 forks source link

Process pipeline richard #52

Closed richardyz98 closed 3 years ago

richardyz98 commented 3 years ago

Hi Matt and Sebastian, This PR contains only the changes relating to the mapping of integers and the change to numpy indexing over loc and iloc. Also contain are some small miscellaneous changes to the documentation and the implementation, such as removing mutation frequencies as a required input from the perform split method and changing the missing data classifier from string/callable to just directly use the callable. I have shelved the Percolation algorithm for now until the next PR.

Thank you in advance for your comments!