Solver tree refactor - Githubissues

YosefLab / Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

https://cassiopeia-lineage.readthedocs.io/en/latest/

MIT License

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Solver tree refactor #61

Closed mattjones315 closed 3 years ago

mattjones315 commented 3 years ago

Changing solver APIs to all ingest a CassiopeiaTree. The intended workflow is:

tree = cas.data.CassiopeiaTree(character_matrix, priors, etc.)
solver = cas.solver.DerivedCassiopeiaSolver(params)
solver.solve(tree)

newick = tree.get_newick()
...