YosefLab / Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
https://cassiopeia-lineage.readthedocs.io/en/latest/
MIT License
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Add functionality in pipeline to create unmapped bam from fastqs (drop cellranger dependency) #99

Closed Lioscro closed 3 years ago

Lioscro commented 3 years ago

This PR completely drops cellranger dependency by adding functionality to convert FASTQs to an unmapped BAM and perform (optional) barcode correction to a whitelist.