Are there any schematics to visualize where each reaction are at relative to each subsystem?

YosefLab / Compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

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Are there any schematics to visualize where each reaction are at relative to each subsystem? #107

Open ahdee opened 8 months ago

ahdee commented 8 months ago

For example, I have the reaction_name "Isocitrate dehydrogenase (NADP+)", aka ICDHyrm_pos significantly differently in my experimental group. Are there any schematic in the compass resources that I can use to visualize where this is at in the citric cycle?

thanks.

DPLemonade commented 3 months ago

Hi @ahdee! Virtual Metabolic Human provides visualizations of the RECON2 metabolic network. The visualization for ICDHyrm can be found here.