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YosefLab / Compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
BSD 3-Clause "New" or "Revised" License
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Is Recon3D version 3.01 suitable for model construction? #76

Open MingwuDuan opened 2 years ago

MingwuDuan commented 2 years ago

Hi Compass Team, Thanks for this great python package! Since the Recon_2.02 model released in year 2013 (https://www.vmh.life/#downloadview) did not contain recent knowledge update and the version 3.01 has been released, my concern is how I should parse these .mat files in downloaded Recon3D_301.zip to fit the --model parameter? Furthermore, Robinson JL , et al has shared their own GEM (https://zenodo.org/record/3583004) along with the Sci Signal paper (https://doi.org/10.1126%2Fscisignal.aaz1482), does Compass support model importing or customizing? Best, Duan

Olamide025 commented 1 year ago

@MingwuDuan Did you get a reply on this request?. Or did you find away to parse the Recon3D to compass?