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YosefLab / Compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
BSD 3-Clause "New" or "Revised" License
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Sample_name problem #89

Open ZachLW opened 2 years ago

ZachLW commented 2 years ago

Hi all, Thanks for creating such an amazing tool. I faced a TypeError when running compass, see attached: image Details: Since I have made some analysis on my datasets before, thus every sample name was re-named (from index) and ordered into 0, 1, 2, 3..... I have another file to annotate every sample into specific clusters, but I think it may not compatible with the request for sample_names.tsv for the compass input. I'm not sure how to solve this error, could someone help me with this? Thanks a lot in advance!

akshayabalasubramanian commented 1 year ago

I'm having the same issue. Were you able to resolve this?

naveena-ujagar commented 1 year ago

I'm having the same issue. Were you able to resolve this?

Hi @akshayabalasubramanian ,

It seems like we're having similar issues when using Compass. Would you like to connect in order to solve our problems together? My email is nujagar@uci.edu