and I get the following error:
Importing counts from obj[["RNA"]]@counts ...
Normalizing to counts per 10,000...
Error in .local(data, ...) :
no slot of name "counts" for this object of class "Assay5"
I believe this is because of the new seurat object data structure but I don't know how to point the function to the layer
Hello,
Sorry if this is a very basic question but I am trying to make a Vision object from a SeuratV5 object
`signatures <- c("mh.all.v2023.2.Mm.symbols.gmt")
vision.obj <- Vision(seu.object, signatures = signatures)`
and I get the following error: Importing counts from obj[["RNA"]]@counts ... Normalizing to counts per 10,000... Error in .local(data, ...) : no slot of name "counts" for this object of class "Assay5"
I believe this is because of the new seurat object data structure but I don't know how to point the function to the layer
Thank you!