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YosefLab
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epitome
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
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indent h5 close
#96
akmorrow13
closed
2 years ago
0
Bug in parallel_download.py
#95
DavidQuigley
closed
2 years ago
1
Error loading weights for Epitome model
#94
Al-Murphy
closed
2 years ago
1
Error loading checkpoint Epitome model
#93
Al-Murphy
closed
2 years ago
2
Pre-trained version of Epitome available
#92
Al-Murphy
closed
2 years ago
1
pip installation fails for epitome
#91
Al-Murphy
closed
2 years ago
3
remove support for python 3.6
#90
akmorrow13
closed
3 years ago
0
Python 3.9
#89
btecu
closed
3 years ago
1
clean up and add unit test for predict_matrix
#88
akmorrow13
closed
3 years ago
0
Continuous spelling correction
#87
akmorrow13
closed
3 years ago
0
Fast score matrix
#86
RK900
closed
2 years ago
0
score matrix fast
#85
RK900
closed
3 years ago
0
Fix toy data
#84
akmorrow13
closed
3 years ago
0
Speedy score matrix
#83
RK900
closed
3 years ago
1
Does not build with setuptools>52.0.0
#82
akmorrow13
closed
3 years ago
0
Genome Manager
#81
januusingh
closed
3 years ago
1
Genome Manager
#80
januusingh
closed
3 years ago
1
fixes saving files for single cell models
#79
akmorrow13
closed
3 years ago
0
works with scATAC-seq/continous data
#78
akmorrow13
closed
3 years ago
0
v0.0.1a3
#77
akmorrow13
closed
3 years ago
0
prtest
#76
akmorrow13
closed
3 years ago
0
Release scripts
#75
akmorrow13
closed
3 years ago
0
updated readme
#74
akmorrow13
closed
3 years ago
0
Pr 63
#73
akmorrow13
closed
3 years ago
0
Add a Codacy badge to README.md
#72
codacy-badger
closed
3 years ago
0
fix gast error
#71
akmorrow13
closed
3 years ago
0
add badges
#70
akmorrow13
closed
3 years ago
0
remove codecov
#69
akmorrow13
closed
3 years ago
0
added workflow for github actions
#68
akmorrow13
closed
3 years ago
0
added link to readthedocs
#67
akmorrow13
closed
3 years ago
0
Update README and rename model to EpitomeModel
#66
akmorrow13
closed
3 years ago
0
fixed bug in download ChIP-Atlas code
#65
akmorrow13
closed
3 years ago
0
Rebased all region conversions into a class
#64
akmorrow13
closed
3 years ago
0
pr54 with docs
#63
januusingh
closed
3 years ago
1
Load in entire data matrix when selecting many indices
#62
akmorrow13
closed
3 years ago
0
Bump matplotlib version
#61
RK900
closed
3 years ago
1
Fix dataset class docs
#60
RK900
closed
3 years ago
1
New VLP model cannot be created
#59
RK900
closed
3 years ago
4
Rebase score_peak_file to not duplicate code
#58
akmorrow13
opened
3 years ago
0
fixed avging bug in score_matrix
#57
akmorrow13
closed
3 years ago
0
fixed dataset access for hg19
#56
akmorrow13
closed
3 years ago
0
Remove stds
#55
akmorrow13
closed
3 years ago
0
Jahnavi earlystop
#54
akmorrow13
closed
3 years ago
1
Draft pull request from a different branch
#53
januusingh
closed
3 years ago
1
cannot update pyranges to 0.0.92
#52
akmorrow13
closed
3 years ago
3
Loss is not printed
#51
akmorrow13
closed
3 years ago
1
setup does not work with setuptools version 50.0.3
#50
akmorrow13
closed
3 years ago
0
fixed DNase truncation issue
#49
akmorrow13
closed
3 years ago
0
Move tf.function outside of predict functions and fix Pyranges issue
#48
RK900
closed
3 years ago
4
Scoping issue with large matrices
#47
RK900
opened
3 years ago
0
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