YosefLab / mrvi-reproducibility

Nextflow pipeline for MrVI pipelines
BSD 3-Clause "New" or "Revised" License
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Add composition baseline variant functionality #45

Closed justjhong closed 1 year ago

justjhong commented 1 year ago

Pretty hacky way of doing this, but at least consistent with how I did the nonlinear scviv2. Let me know what you think. (perhaps redun is better in this aspect too).

Note: the scVI baselines have redundant training which can be really bad. Would be good to figure out a way to factor this computation out @martinkim0