YosefLab scib-metrics issues

YosefLab / scib-metrics

Accelerated, Python-only, single-cell integration benchmarking metrics

https://scib-metrics.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

45 stars 11 forks source link

issues

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Make get_results work, if either no BatchCorrection or BioConservation metrics.

#179 LArnoldt opened 6 days ago
1
[pre-commit.ci] pre-commit autoupdate

#178 pre-commit-ci[bot] opened 1 week ago
1
Add more ruff rules

#177 adamgayoso closed 1 week ago
1
[pre-commit.ci] pre-commit autoupdate

#176 pre-commit-ci[bot] closed 2 weeks ago
1
progress bar not moving

#175 Flu09 closed 2 weeks ago
1
Typing fixes

#174 adamgayoso closed 3 weeks ago
1
Add seed to leiden clustering

#173 adamgayoso closed 3 weeks ago
1
Fix kmeans test instability

#172 adamgayoso closed 3 weeks ago
1
Fix warnings

#171 adamgayoso closed 3 weeks ago
1
Use new scanpy umap connectivity fn in test

#170 adamgayoso closed 3 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#169 pre-commit-ci[bot] closed 3 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#168 pre-commit-ci[bot] closed 2 months ago
0
[pre-commit.ci] pre-commit autoupdate

#167 pre-commit-ci[bot] closed 2 months ago
0
[pre-commit.ci] pre-commit autoupdate

#166 pre-commit-ci[bot] closed 2 months ago
0
Update template to v0.4.0

#165 scverse-bot closed 3 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#164 pre-commit-ci[bot] closed 3 months ago
0
[pre-commit.ci] pre-commit autoupdate

#163 pre-commit-ci[bot] closed 4 months ago
0
[pre-commit.ci] pre-commit autoupdate

#162 pre-commit-ci[bot] closed 4 months ago
0
[pre-commit.ci] pre-commit autoupdate

#161 pre-commit-ci[bot] closed 5 months ago
0
[pre-commit.ci] pre-commit autoupdate

#160 pre-commit-ci[bot] closed 5 months ago
0
[pre-commit.ci] pre-commit autoupdate

#159 pre-commit-ci[bot] closed 5 months ago
0
[pre-commit.ci] pre-commit autoupdate

#158 pre-commit-ci[bot] closed 5 months ago
1
bm.plot_results_table() fails when all batch correction metrics are set to False

#157 soerenab opened 5 months ago
5
[pre-commit.ci] pre-commit autoupdate

#156 pre-commit-ci[bot] closed 5 months ago
1
[pre-commit.ci] pre-commit autoupdate

#155 pre-commit-ci[bot] closed 6 months ago
1
Allow scArches to extend categorical covariates

#154 martinkim0 closed 6 months ago
0
`Benchmarker`'s progress bar does not adjust based on `settings.progress_bar_style`

#153 martinkim0 opened 6 months ago
0
add progress bar arg to benchmarker

#152 martinkim0 closed 6 months ago
1
[releases] add date to 0.5.1, start 0.6.0

#151 martinkim0 closed 6 months ago
0
KBET (without labels) to BatchCorrection

#150 lebelm opened 6 months ago
1
[misc] move metric files to directory

#149 martinkim0 closed 6 months ago
0
[docs] update docstrings

#148 martinkim0 closed 6 months ago
1
[misc] skip workflows, pre-commit, pyproject in template sync

#147 martinkim0 closed 6 months ago
0
[misc] remove bumpversion

#146 martinkim0 closed 6 months ago
0
[docs] update readme badges and typos

#145 martinkim0 closed 6 months ago
0
Add workflow for running tutorials in containers

#144 martinkim0 opened 6 months ago
0
[docs] add sphinx extlinks for changelog

#143 martinkim0 closed 6 months ago
1
[releases] start 0.5.1

#142 martinkim0 closed 6 months ago
0
[misc] add node_modules to ignore, put date on 0.5.0

#141 martinkim0 closed 6 months ago
0
[ci] remove prerelease flag from normal tests

#140 martinkim0 closed 6 months ago
0
Update template to v0.3.1

#139 scverse-bot closed 6 months ago
2
Release scib-metrics 0.5.1

#138 martinkim0 closed 6 months ago
0
[pre-commit.ci] pre-commit autoupdate

#137 pre-commit-ci[bot] closed 6 months ago
1
[pre-commit.ci] pre-commit autoupdate

#136 pre-commit-ci[bot] closed 6 months ago
1
Replace deprecated `KeyArray` with `Array`

#135 martinkim0 closed 7 months ago
1
Add prerelease, cuda, macos, windows test workflows

#134 martinkim0 closed 7 months ago
1
the count matrices don't contain counts

#133 jkobject opened 7 months ago
3
[pre-commit.ci] pre-commit autoupdate

#132 pre-commit-ci[bot] closed 7 months ago
1
Create setup.py

#131 adamgayoso closed 8 months ago
0
Update release.yaml

#130 adamgayoso closed 8 months ago
0