Open PodevynLoris opened 10 months ago
Try with / without template and see what results you get.
You could also try --custom-template-path ./your_dir_containing_your_template_pdb_files
as described here: https://github.com/YoshitakaMo/localcolabfold/issues/168
Hello, I am new to protein design so this is a noob question , I'll close the issue asap.
I want to predict the complex of a designed monomer (protein 1) and another (protein2) which is an antigen. During the folding , I'd like my monomer(protein1) to mimic the structure of the antibody that original attach to antigen (protein 2).
I have a pdb template (pdb code : 7F62), I also have it locally without the extra molecules.
If I add the --template argument, will my single monomer mimic the structure of the antibody even tho it is made of 2 chains ?
My input :
Best, Loris