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YoshitakaMo / localcolabfold

ColabFold on your local PC
MIT License
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ConnectionResetError: [Errno 104] Connection reset by peer #208

Open niubo-xingshen opened 8 months ago

niubo-xingshen commented 8 months ago

colabfold_batch /data/text.fasta /data/zzq_NC/temp/clf 2024-01-21 23:19:06,148 Running colabfold 1.5.5 Traceback (most recent call last): File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/connectionpool.py", line 790, in urlopen response = self._make_request( File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/connectionpool.py", line 491, in _make_request raise new_e File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/connectionpool.py", line 467, in _make_request self._validate_conn(conn) File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/connectionpool.py", line 1096, in _validate_conn conn.connect() File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/connection.py", line 642, in connect sock_and_verified = _ssl_wrap_socket_and_match_hostname( File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/connection.py", line 782, in _ssl_wrap_socket_and_match_hostname ssl_sock = ssl_wrapsocket( File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/util/ssl.py", line 470, in ssl_wrap_socket ssl_sock = _ssl_wrap_socket_impl(sock, context, tls_in_tls, serverhostname) File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/site-packages/urllib3/util/ssl.py", line 514, in _ssl_wrap_socket_impl return ssl_context.wrap_socket(sock, server_hostname=server_hostname) File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/ssl.py", line 513, in wrap_socket return self.sslsocket_class._create( File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/ssl.py", line 1104, in _create self.do_handshake() File "/data/clf/localcolabfold/colabfold-conda/lib/python3.10/ssl.py", line 1375, in do_handshake self._sslobj.do_handshake() ConnectionResetError: [Errno 104] Connection reset by peer

During handling of the above exception, another exception occurred:

YoshitakaMo commented 6 months ago

In many cases, the issue arises because the computational environment running ColabFold doesn't allow Internet connection or experiences connectivity problems (around SSL). If you're using a supercomputer, it's possible that the compute nodes may not permit Internet access. Please consult your network administrator for more details on this issue.

niubo-xingshen commented 6 months ago

Thank you! by the way，Is there a way to use it locally and bypass network access?