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YoshitakaMo / localcolabfold

ColabFold on your local PC
MIT License
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Question: Is it possible to output a table of IDDT / pLDDTs? #217

Closed dbolser closed 8 months ago

dbolser commented 8 months ago

The tool nicely outputs a PNG with predicted IDDT against position in the chain, but I'd really like to get that data as a table.

Searching the output directories, I can't seem to find it... Is it in there somewhere?

Is there a flag to generate it?

Many thanks, Dan.

YoshitakaMo commented 8 months ago

The plddt, pae, max_ptm, ptm, and iptm values are stored in a file named **_scores_rank_00*_alphafold2_**_*_model_*_seed_00*.json. You can parse these values per the predicted pdb file.

dbolser commented 8 months ago

I'm so sorry, I was sure I had checked those files!

Many thanks.