First thanks to build this usefull package. I'm wondering if I can used the function enrichPathway() with a custom annodb library. In fact when I used this code :
for (peakAnno in peakAnnoList){
pathway1 <- enrichPathway(as.data.frame(peakAnno)$geneId,organism="Cucumis melo")
head(pathway1, 2)
}
I have this issue : Failed with error: ''package' must be of length 1'
After check your code and goggle the issues I have understand that this is due to the organism argument that is not set on "human". But I don't used this model so how can I used my custom library ?
Hi,
First thanks to build this usefull package. I'm wondering if I can used the function enrichPathway() with a custom annodb library. In fact when I used this code :
I have this issue : Failed with error: ''package' must be of length 1'
After check your code and goggle the issues I have understand that this is due to the organism argument that is not set on "human". But I don't used this model so how can I used my custom library ?
Thanks in advance