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YuLab-SMU / ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization
https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
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Feature requests about plotPeakProf2 again... #192

Open yuanlizhanshi opened 2 years ago

yuanlizhanshi commented 2 years ago

Hello, I have used some of the new features of plotPeakProf2.

It could be able to compare the peak distribution in self-made Grange objects such as the enhancers region.

But if it could accept two or more self-made Grange objects in plotPeakProf2 would be better.

Thus, we could divide our genes into different groups by their expression levels or other interest features to compare wheater TF is correlated to gene expression. Besides, we also could compare the H3K4me1 peak distribution in enhancer regions or non-enhancer regions.

l will be appreciated it if you could take my requests into consideration

MingLi-929 commented 2 years ago

Thank a lot for your feed back! The function is almost finished with a little testings need to be done. Maybe two days or three days

MingLi-929 commented 2 years ago

supported

MingLi-929 commented 2 years ago

pls try this https://github.com/YuLab-SMU/ChIPseeker/pull/190#issuecomment-1136120619 to see if this function meet your need.