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YuLab-SMU / ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization
https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
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When using enrichPeakOverlap, why the p values of different target peaks are same? #224

Open Dragonlongzhilin opened 9 months ago

Dragonlongzhilin commented 9 months ago

Thank you for developing the wonderful tool. I'm having a problem with the enrichPeakOverlap function. I found that the p-value is the same for different target peaks.

The following code I used: E7min.res <- enrichPeakOverlap(queryPeak = E7min, targetPeak = peak.list, nShuffle = 10000, mc.cores = 24, TxDb = txdb)

The output is: image