Quick question:
The distance bins used by plotDistToTSS() seem to be hard-coded into lines 52-55 of plotDistToTSS.R. Would it be possible to turn them into function parameters?
## assign Feature according to the distancetoFeature
peakDist$Feature <- NA
limit <- c(0, 1000, 3000, 5000, 10000, 100000)
lbs <- c("0-1kb", "1-3kb", "3-5kb", "5-10kb", "10-100kb", ">100kb")
For species with small genomes (e.g. Fruit flies, yeast, C.elegans) these are huge distances and being able to customise them would be fantastic.
Great tool, thanks a lot!
Quick question: The distance bins used by
plotDistToTSS()
seem to be hard-coded into lines 52-55 ofplotDistToTSS.R
. Would it be possible to turn them into function parameters?For species with small genomes (e.g. Fruit flies, yeast, C.elegans) these are huge distances and being able to customise them would be fantastic.
Thanks a lot!