Describe you issue

Ensembl-based annotation,

edb <- EnsDb.Hsapiens.v97 seqlevelsStyle(edb) <- "UCSC" peakAnno.edb <- annotatePeak(myFile, tssRegion=c(-3000, 3000), TxDb=edb, annoDb="org.Hs.eg.db")

seqnames did not match geneChr. e.g. chr20 vs 2

seqnames | start | end | annotation | geneChr | geneStart | geneEnd | geneLength | geneStrand -- | -- | -- | -- | -- | -- | -- | -- | -- chr20 | 58888051 | 58890615 | Promoter (<=1kb) | 2 | 58888413 | 58900410 | 11998 | 1

[ ] Make a reproducible example (e.g. 1)
[ ] your code should contain comments to describe the problem (e.g. what expected and actually happened?)

The same error for the example in you tutorial where ensDb.Hsapiens.v75 was used.

Ask in right place

[ ] for bugs or feature requests, post here (github issue)
[ ] for questions, please post to Bioconductor or Biostars with tag ChIPseeker

YuLab-SMU / ChIPseeker

error with Ensembl-based annotation #233

Describe you issue

Ensembl-based annotation,

Ask in right place