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YuLab-SMU
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DOSE
:mask: Disease Ontology Semantic and Enrichment analysis
https://yulab-smu.top/biomedical-knowledge-mining-book/
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Issues w/expected input genes
#35
jinkinson
opened
4 years ago
3
Modify the function dodata
#34
huerqiang
closed
4 years ago
0
enrichNCG - update the database
#33
ABanaeiEsfahani
closed
4 years ago
2
fix bugs for "length > 1 in coercion to logical"
#32
huerqiang
closed
4 years ago
0
Error: object 'upsetplot' not found
#31
TimJCooper
opened
4 years ago
1
调整几个函数的参数,以适应新版本的fgsea
#30
huerqiang
closed
4 years ago
7
add slot gene2Symbol for class compareClusterResult
#29
huerqiang
closed
4 years ago
1
Some problems about 'maxGSSize' parameter in enricher_interval series function
#28
huangwb8
opened
4 years ago
1
information content calculation discordance
#27
ieiwk
opened
5 years ago
0
P-value cutoff _also_ applied to adjusted P-value
#26
kevinrue
opened
5 years ago
0
segfault while installing
#25
gaiazaff
closed
6 years ago
9
GSEA result p.adjust vs qvalue
#24
mgandal
opened
6 years ago
0
DOSE::gseaplot v3.4.0 does NOT plot Running Enrichment Score correctly
#23
Ni-Ar
closed
6 years ago
8
Update to DisGeNet 5?
#22
tonigi
opened
6 years ago
2
Some functions documented are not exported
#21
llrs
closed
7 years ago
3
visualizing GSEA results with 'dotplot'
#20
guidohooiveld
closed
2 years ago
35
compareCluster error
#19
Georgewiggins
closed
7 years ago
1
Disrepancy GSEA results when using by="DOSE" or by="fgsea"
#18
guidohooiveld
opened
7 years ago
3
Changing print to message
#17
llrs
closed
7 years ago
1
gseDO() example doesn't run
#16
guidohooiveld
closed
7 years ago
10
Unable to plot with enrichMap
#15
llrs
closed
8 years ago
7
Adding other arguments to the plot
#14
llrs
closed
8 years ago
1
Added option to customize a title for the GSEA plots
#13
pedrostrusso
closed
8 years ago
2
Question: How to combine multiple enrichmentResult objects
#12
wyu
closed
7 years ago
5
enrichGO() gives incorrect results due to different filtering of gene and universe set
#11
Gig77
closed
8 years ago
7
GSEA() qvalue error when using very few terms
#10
Runsheng
closed
8 years ago
1
Add maxGSSize flag
#9
gregkoytiger
closed
8 years ago
0
update of NCG environment?
#8
dalloliogm
closed
9 years ago
4
Merge pull request #3 from GuangchuangYu/master
#7
dalloliogm
closed
9 years ago
0
improve GO and DO enrichment for GTEx papers?
#6
dalloliogm
closed
8 years ago
4
controlling reproducibility of permutations
#5
vladpetyuk
closed
9 years ago
2
reproducibility of GSEA
#4
vladpetyuk
closed
2 years ago
1
warning on legacy state of worm
#3
vladpetyuk
closed
9 years ago
0
fix bin agreement
#2
vladpetyuk
closed
9 years ago
3
updated description for NCG
#1
dalloliogm
closed
9 years ago
1
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