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YuLab-SMU / GOSemSim

:golf: GO-terms Semantic Similarity Measures
https://yulab-smu.top/biomedical-knowledge-mining-book/
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how to use mgenesem to compute for two different species #22

Closed samKamal9 closed 5 years ago

samKamal9 commented 5 years ago

i am trying the following to get a matrix on human only. but i need for example human vs Sc library(GOSemSim) hsGO <- godata('org.Hs.eg.db', ont="MF") mgeneSim(genes=c("835", "5261","241", "994"), semData=hsGO, measure = "Resnik", drop = "IEA", combine = "BMA")

GuangchuangYu commented 5 years ago

see https://support.bioconductor.org/p/90063/.