YuLab-SMU / MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome
https://www.sciencedirect.com/science/article/pii/S2666675823000164
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rarefy Abundance and rare abundance #122

Open Muneer111 opened 6 months ago

Muneer111 commented 6 months ago

Hi I am facing an issues, When I try to ran mpse2 %<>% mp_rrarefy (.abundance=Abundance) %>% mp_cal_rarecurve (.abundance=Rare Abundance, chunks=500) the code takes lot of times and does not complete, and it forces me to strop it. Is this the normal, that this code takes time, My file size are mpse is 2.1 mb with (2289 elements and 96 observations) I tried to changes the chunks as well Kindly suggest here Thanks and Regards