YuLab-SMU / ReactomePA

Reactome Pathway Analysis

https://yulab-smu.top/biomedical-knowledge-mining-book/

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install issue #20

Closed xiaowenchenjax closed 5 years ago

xiaowenchenjax commented 5 years ago

HI, When i install this package in R/3.5.1, some issue happened. BiocManager::install("ReactomePA", version = "3.8") Bioconductor version 3.8 (BiocManager 1.30.3), R 3.5.1 (2018-07-02) Installing package(s) 'ReactomePA' trying URL 'https://bioconductor.org/packages/3.8/bioc/src/contrib/ReactomePA_1.26.0.tar.gz' Content type 'application/x-gzip' length 3001858 bytes (2.9 MB)

downloaded 2.9 MB

installing source package ‘ReactomePA’ ... R inst ** byte-compile and prepare package for lazy loading Warning in gzfile(file, "rb") : cannot open compressed file '/home/chenx/R/x86_64-pc-linux-gnu-library/3.5/graphite/R/sysdata.rdx', probable reason 'No such file or directory' Error in gzfile(file, "rb") : cannot open the connection ERROR: lazy loading failed for package ‘ReactomePA’
removing ‘/home/chenx/R/x86_64-pc-linux-gnu-library/3.5/ReactomePA’ Could you help me ?

GuangchuangYu commented 5 years ago

cannot open compressed file '/home/chenx/R/x86_64-pc-linux-gnu-library/3.5/graphite/R/sysdata.rdx', probable reason 'No such file or directory'

reinstall graphite.