YuLab-SMU / ReactomePA

Reactome Pathway Analysis
https://yulab-smu.top/biomedical-knowledge-mining-book/
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ReactomePA plot label text overlap #38

Open Jay-Leung opened 2 years ago

Jay-Leung commented 2 years ago

Prerequisites

Describe you issue

Hi, I have ran ReactomePA on ChIP-Seq data and wanted to plot the result with dotplot and barplot. However, the label text between the lines seem to overlap and I am not sure why.

The code I ran is:

pathways <- enrichPathway(gene = common_genes, organism = "human", universe = background_genes)

pathways_dotplot <- dotplot(pathways, showCategory=10)
pathways_dotplot

pathways_barplot <- barplot(pathways)
pathways_barplot

The plots generated are: ReactomePA_dotplot

ReactomePA_barplot

This issue does not appear with other Gene Ontology/KEGG plots. Could you advise? Thanks!

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