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YuLab-SMU / aplot

Decorate a plot with associated information
https://yulab-smu.top/aplot
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update the rd and some depends of oncoplot #33

Closed xiangpin closed 11 months ago

xiangpin commented 11 months ago

example

> library(aplot)
> example(oncoplot)

oncplt> laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")

oncplt> laml.clin <- system.file('extdata', 'tcga_laml_annot.tsv', package = 'maftools')

oncplt> laml <- maftools::read.maf(maf = laml.maf, clinicalData = laml.clin)
-Reading
-Validating
-Silent variants: 475
-Summarizing
-Processing clinical data
-Finished in 0.259s elapsed (0.328s cpu)

oncplt> p <- oncoplot(maf = laml, genes = 20)

oncplt> p
Hit <Return> to see next plot:

aplot2