YuLab-SMU / biomedical-knowledge-mining-book

:books: Biomedical knowledge mining using GOSemSim and clusterProfiler
https://yulab-smu.top/biomedical-knowledge-mining-book/
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Multiple errors in pdf generation #14

Open infrecursion opened 2 years ago

infrecursion commented 2 years ago

There seems to be multiple errors when I tried to generate a pdf using the provided Makefile. Many of the functions are not available like get_wp_organisms() even though clusterProfiler is installed. Is there a list of exact package versions needed to create this pdf reproducibly or perhaps is there a location from where we can download the pdf?