YuLab-SMU / biomedical-knowledge-mining-book

:books: Biomedical knowledge mining using GOSemSim and clusterProfiler
https://yulab-smu.top/biomedical-knowledge-mining-book/
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Error No genes can be mapped while normal enriched on DAVID #22

Open weixiao1991 opened 1 year ago

weixiao1991 commented 1 year ago

I have a set of Entrez id. I preform it used enrichKEGG, and warnging as followed. --> No gene can be mapped.... --> Expected input gene ID: --> return NULL...

However, I upload this set of entrez id on DAVID, it's normally enriched. This is my code: enrichKEGG(ids$ENTREZID, organism = "rno", keyType = "kegg") This is my ID set. ids$ENTREZID: 25081 84604 360228 1.01E+08 24614 303393 50665 681024 361673 24360 24902 94194 25045 288001 1E+08 25518 499782 83782 81683 690441 65139 94271 300677 24567 29754 1E+08 298068 29284 1E+08 140655 27139 361824 29435 362897 294282 24421 192241 24903 28298 161477 29258 25703 361510 680551 81764 64367 25282 192255 689134 688869 299310 252934 64156 29676 79449 296596 25538 65136 29318 292845 65043 366448 29286 29507 81773 64862 29445 192275 171335 299643 1.01E+08 301123 24366 170496 690848 316643 117254 361385 122799 294362 64638 295037 299954 25728 81807 54322 24464 245981 81767 300211 29674 300441 25649 140661 296709 290284 29186 362631 362344 315167 29283 293418 140662 360572 25392 124323 24856 292964 362588 680532 245965 29257 81769 299269 63864 295629 81776 29675 299739 64298 294964 291660 288455 293130 64526 29282 26962 24207 297073 29287 83791 681429 313491 690660 679572 1.01E+08 25490 84355 287417 25134 29673 55939 64372 291434 25488 64001 363241 681418 1E+08 170512 25292 113898 301427 295243 685620 289197 245958 293991 24551 24786 293613 291076 117053 29425 29740 300850 94198 64307 24223 689284 497902 64205 81729 297990 81765 311359 64640 288785 117543 25011 290596 287774 140654 288770 81814 689415 289143 29339 25347 293652 361228 25287 171374 287703 300079 192269 680309 116484 361923 81763 64305 29752 79563 83688 300676 29338 366995 64539 362884 117287 83427 500954 295923 89786 114846 29236 290641 79218 290549 83783 24242 25308 25319 24236 361310 81728 685258 29542 291103 499529 293142 294853 25056 291963 499779 296545 191575 293453 81650