unfortunately, after copy the script:
library(clusterProfiler)
data(geneList, package="DOSE")
de <- names(geneList)[abs(geneList) > 2]
ego <- enrichGO(de, OrgDb = "org.Hs.eg.db", ont="BP", readable=TRUE)
library(enrichplot)
goplot(ego)
I can't visualise the barplot(ego) or dotplot(ego) , but only the heatplot(ego2)
I have this weird error:
Error in farver::decode_colour(colors, alpha = TRUE, to = "lab", na_value = "transparent") :
unused argument (na_value = "transparent")
Can you please tell me how to fix it?
Kind Regards,
Giorgio
Dear All,
I am following the Induced GO DAG graph.
unfortunately, after copy the script: library(clusterProfiler) data(geneList, package="DOSE") de <- names(geneList)[abs(geneList) > 2] ego <- enrichGO(de, OrgDb = "org.Hs.eg.db", ont="BP", readable=TRUE)
library(enrichplot) goplot(ego)
I can't visualise the barplot(ego) or dotplot(ego) , but only the heatplot(ego2)
I have this weird error:
Error in farver::decode_colour(colors, alpha = TRUE, to = "lab", na_value = "transparent") : unused argument (na_value = "transparent")
Can you please tell me how to fix it? Kind Regards, Giorgio