library报错 - Githubissues

Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 载入了名字空间‘GOSemSim’ 2.24.0，但需要的是>= 2.27.2 Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace 停止执行 ERROR: lazy loading failed for package ‘clusterProfiler’

removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/clusterProfiler’
restoring previous ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/clusterProfiler’ Warning message: In i.p(...) : 安装程序包‘/var/folders/st/7qpxbzfj6gl6tpcp2739bwnr0000gn/T//RtmpvIa6qt/file412b7679050b/clusterProfiler_4.9.3.002.tar.gz’时退出狀態的值不是0

sessionInfo() R version 4.2.1 (2022-06-23) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Monterey 12.2.1 Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale: [1] zh_CN.UTF-8/zh_CN.UTF-8/zh_CN.UTF-8/C/zh_CN.UTF-8/zh_CN.UTF-8

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] org.Hs.eg.db_3.15.0 AnnotationDbi_1.58.0 IRanges_2.30.1 S4Vectors_0.34.0 Biobase_2.56.0
[6] BiocGenerics_0.42.0 ggpubr_0.4.0 ggsignif_0.6.3 reshape2_1.4.4 patchwork_1.1.2
[11] forcats_0.5.2 stringr_1.4.1 dplyr_1.0.10 purrr_0.3.4 readr_2.1.2
[16] tidyr_1.2.1 tibble_3.1.8 ggplot2_3.3.6 tidyverse_1.3.2 sp_1.5-0
[21] SeuratObject_4.1.1 Seurat_4.1.1

loaded via a [1] scattermore_0.8 [5] bit64_4.0.5 [9] rpart_4.1.16 [13] flowCore_2.8.0 [17] RSQLite_2.2.17 [21] bit_4.0.4 [25] lubridate_1.8.0 [29] gargle_1.2.1 [33] promises_1.2.0.1 [37] Rgraphviz_2.40.0 [41] spatstat.geom_2.4-0 [45] ggnewscale_0.4.8 [49] deldir_1.0-6 [53] abind_1.4-5 [57] aws.signature_0.6.0 [61] goftest_1.2-3 [65] pkgconfig_2.0.3 [69] nlme_3.1-157 [73] globals_0.16.1 [77] rprojroot_2.0.3 [81] lmtest_0.9-40 [85] zoo_1.8-11 [89] processx_3.7.0 [93] viridisLite_0.4.1 [97] KernSmooth_2.23-20 [101] spatstat.random_2.2-0 [105] scales_1.2.1 [109] hexbin_1.28.2 [113] RColorBrewer_1.1-3 [117] urlchecker_1.0.1 [121] ps_1.7.1 [125] tidyselect_1.1.2 [129] yaml_2.3.5 [133] tools_4.2.1 [137] rstudioapi_0.14 [141] ggraph_2.0.6 [145] shiny_1.7.2 [149] later_1.3.0 [153] rvest_1.0.3 [157] reticulate_1.26 [161] spatstat.utils_2.3-1 [165] xtable_1.8-4 [169] profvis_0.3.7 [173] glue_1.6.2 [177] utf8_1.2.2 [181] leiden_0.4.3 [185] survival_3.3-1 [189] GenomeInfoDbData_1.2.8 namespace (and not attached): flowWorkspace_4.8.0 R.methodsS3_1.8.2 knitr_1.40
irlba_2.3.5 R.utils_2.12.0 data.table_1.14.2
RCurl_1.98-1.8 KEGGREST_1.36.3 generics_0.1.3
callr_3.7.2 cowplot_1.1.1 usethis_2.1.6
RANN_2.6.1 future_1.28.0 ggpointdensity_0.1.0
tzdb_0.3.0 spatstat.data_2.2-0 xml2_1.3.3
httpuv_1.6.6 assertthat_0.2.1 viridis_0.6.2
xfun_0.33 hms_1.1.2 evaluate_0.16
fansi_1.0.3 dbplyr_2.2.1 readxl_1.4.1
igraph_1.3.4 DBI_1.1.3 htmlwidgets_1.5.4
googledrive_2.0.0 ellipsis_0.3.2 ggcyto_1.24.1
backports_1.4.1 cytolib_2.10.1 RcppParallel_5.1.7
vctrs_0.4.1 remotes_2.4.2 ROCR_1.0-11
cachem_1.0.6 withr_2.5.0 ggforce_0.3.4
progressr_0.11.0 sctransform_0.3.4 prettyunits_1.1.1
cluster_2.1.3 lazyeval_0.2.2 crayon_1.5.1
labeling_0.4.2 tweenr_2.0.2 GenomeInfoDb_1.32.4
pkgload_1.3.0 devtools_2.4.4 rlang_1.0.5
lifecycle_1.0.2 miniUI_0.1.1.1 modelr_0.1.9
cellranger_1.1.0 polyclip_1.10-0 matrixStats_0.62.0
graph_1.74.0 Matrix_1.5-1 carData_3.0-5
reprex_2.0.2 base64enc_0.1-3 ggridges_0.5.3
googlesheets4_1.0.1 pheatmap_1.0.12 png_0.1-7
bitops_1.0-7 R.oo_1.25.0 ConsensusClusterPlus_1.60.0 Biostrings_2.64.1 blob_1.2.3 parallelly_1.32.1
jpeg_0.1-9 rstatix_0.7.0 aws.s3_0.3.21
memoise_2.0.1 magrittr_2.0.3 plyr_1.8.7
ica_1.0-3 zlibbioc_1.42.0 compiler_4.2.1
fitdistrplus_1.1-8 cli_3.4.0 XVector_0.36.0
listenv_0.8.0 ncdfFlow_2.42.1 pbapply_1.5-0
FlowSOM_2.4.0 MASS_7.3-57 mgcv_1.8-40
stringi_1.7.8 RProtoBufLib_2.7.4 GOSemSim_2.24.0
latticeExtra_0.6-30 ggrepel_0.9.1 grid_4.2.1
future.apply_1.9.1 parallel_4.2.1 CytoML_2.8.1
gridExtra_2.3 farver_2.1.1 Rtsne_0.16
digest_0.6.29 BiocManager_1.30.18 rgeos_0.5-9
Rcpp_1.0.9 car_3.1-0 broom_1.0.1
RcppAnnoy_0.0.19 httr_1.4.4 colorspace_2.0-3
XML_3.99-0.10 fs_1.5.2 tensor_1.5
splines_4.2.1 uwot_0.1.14 RBGL_1.72.0
graphlayouts_0.8.1 plotly_4.10.0 sessioninfo_1.2.2
jsonlite_1.8.0 tidygraph_1.2.2 R6_2.5.1
pillar_1.8.1 htmltools_0.5.3 mime_0.12
fastmap_1.1.0 codetools_0.2-18 pkgbuild_1.3.1
lattice_0.20-45 spatstat.sparse_2.1-1 curl_4.3.2
colorRamps_2.3.1 GO.db_3.15.0 interp_1.1-3
limma_3.52.3 rmarkdown_2.16 munsell_0.5.0
haven_2.5.1 gtable_0.3.1 spatstat.core_2.4-4

YuLab-SMU / clusterProfiler

library报错 #622