I tried to install package MPO.db but encountered following errors.
> BiocManager::install("MPO.db")
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Installing package(s) 'MPO.db'
trying URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/MPO.db_0.99.7.tar.gz'
Content type 'application/x-gzip' length 29300 bytes (28 KB)
==================================================
downloaded 28 KB
* installing *source* package ‘MPO.db’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Couldn't set cache size: database disk image is malformed
Use `cache_size` = NULL to turn off this warning.
Warning: Couldn't set synchronous mode: database disk image is malformed
Use `synchronous` = NULL to turn off this warning.
Error: package or namespace load failed for ‘MPO.db’:
.onLoad failed in loadNamespace() for 'MPO.db', details:
call: NULL
error: database disk image is malformed
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/zhouyuheng/.conda/envs/zhouyuheng1/lib/R/library/MPO.db
The downloaded source packages are in
‘/tmp/RtmpoO0pWd/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done`
Session info
> sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: CentOS Linux 8
Matrix products: default
BLAS/LAPACK: /home/zhouyuheng/.conda/envs/zhouyuheng1/lib/libopenblasp-r0.3.21.so; LAPACK version 3.9.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: Asia/Shanghai
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] BiocManager_1.30.22 compiler_4.3.1 tools_4.3.1
I tried to install package MPO.db but encountered following errors.
The downloaded source packages are in ‘/tmp/RtmpoO0pWd/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done`
Session info
Could you please help me further?