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YuLab-SMU / clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data
https://yulab-smu.top/biomedical-knowledge-mining-book/
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[feature request] Support metabolite enrichment analysis #668

Closed Landau1994 closed 2 months ago

Landau1994 commented 4 months ago

Will ClusterProfiler support metabolite enrichment analysis in the near future?

guidohooiveld commented 4 months ago

Note that I am not an expert on metabolomics. Yet, my thoughts: by using the generic functions enricher and GSEA one could perform over-representations resp. enrichment analysis on any type of data / input. So the analytical framework is already available. The question I have is what exactly is the type of input data you have in mind, and which source to use for predefined metabolite pathways and disease states?

GuangchuangYu commented 2 months ago

see the https://github.com/YuLab-SMU/MicrobiomeProfiler package.