Open davetang opened 1 month ago
I don't have much experience with Docker, but FWIW: I am able to update yulab.utils
to its latest version (0.1.6) using BiocManager
(despite yulab.utils
being hosted on CRAN and not Bioconductor).
> BiocManager::install(c('yulab.utils'), force=TRUE)
Bioconductor version 3.19 (BiocManager 1.30.24), R 4.4.0 Patched (2024-05-21
r86580 ucrt)
Installing package(s) 'yulab.utils'
trying URL 'https://cloud.r-project.org/bin/windows/contrib/4.4/yulab.utils_0.1.6.zip'
Content type 'application/zip' length 105173 bytes (102 KB)
downloaded 102 KB
package ‘yulab.utils’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\TMP_R\Rtmpawdhut\downloaded_packages
> packageVersion("yulab.utils")
[1] ‘0.1.6’
>
Prerequisites
Describe your issue
I can't install clusterProfiler. Reproducible steps using Docker:
I didn't have a problem installing version 4.12.2 (that I did a month ago) but it isn't clear to me how to install a specific version of a Bioconductor package because it seems that a Bioconductor package is linked with a Bioconductor version.
Ask in the right place
clusterProfiler