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YuLab-SMU / clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data
https://yulab-smu.top/biomedical-knowledge-mining-book/
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enrichWP is not working for a few organisms #729

Open prateekgv opened 3 days ago

prateekgv commented 3 days ago

R version 4.3.1

packageVersion("clusterProfiler") ‘4.10.1’

get_wp_organisms() gives: "Caenorhabditis elegans" "Bos taurus" "Arabidopsis thaliana"

guidohooiveld commented 10 hours ago

Mmm, did you also try with the latest version of clusterProfiler (and R)? It is working in my hands....

> get_wp_organisms() 
 [1] "Anopheles gambiae"        "Arabidopsis thaliana"    
 [3] "Bos taurus"               "Caenorhabditis elegans"  
 [5] "Canis familiaris"         "Danio rerio"             
 [7] "Drosophila melanogaster"  "Equus caballus"          
 [9] "Gallus gallus"            "Homo sapiens"            
[11] "Mus musculus"             "Pan troglodytes"         
[13] "Populus trichocarpa"      "Rattus norvegicus"       
[15] "Saccharomyces cerevisiae" "Solanum lycopersicum"    
[17] "Sus scrofa"               "Zea mays"                
> packageVersion("clusterProfiler")
[1] ‘4.12.6’
> R.Version()$version.string
[1] "R version 4.4.0 Patched (2024-05-21 r86580 ucrt)"
>