Closed Long-zhe closed 4 days ago
I am also getting the same error. I have recently updated to R 4.4 and when I revert back to R4.3.3 I don't get the error occurring anymore. Not a great fix, but you could try reverting back to R4.3.3 and see if you still get the same error?
I am also getting the same error. I have recently updated to R 4.4 and when I revert back to R4.3.3 I don't get the error occurring anymore. Not a great fix, but you could try reverting back to R4.3.3 and see if you still get the same error?
Thanks, When I use the R 4.2.2,don't get the error occurring!
No problem! Seems to be some incompatibility between clusterProfiler 4.12.6 and R 4.4 - hopefully it'll get fixed soon!
fixed.
Dear Uncle Y, hello!
I encountered some issues while using the R package (clusterProfiler) you developed. When using goplot, the following error message appeared:
Error in AnnotationDbi::mget(id, GOANCESTOR) : second argument must be an environment
Subsequently, I followed the user manual you wrote(https://yulab-smu.top/biomedical-knowledge-mining-book/clusterprofiler-go.html) and tried using the example code above(https://yulab-smu.top/biomedical-knowledge-mining-book/clusterprofiler-go.html#clusterprofiler-go-ora), but still encountered the same problem
At first, I thought it might be a problem caused by the server, so I ran the example code in the manual in R studio on my local Windows computer, but the same problem still occurred.
But I use barplot and dotplot, both of which can run normally.
I really couldn't find a solution before coming to you for help. I'm very sorry to disturb you and look forward to your suggestions to help me solve the problem. Thank you very much!