Hello, I am using the latest version of enrichplot and clusterProfiler from github. For some reason the cnetplot and heatmap function dont show the Foldchange even if i provide it as a named vector which has been sorted in decreasing order. The nodes are just coloured grey. i have included my code to generate the named numeric vector and the code for the cnetplot
Hello, I am using the latest version of enrichplot and clusterProfiler from github. For some reason the cnetplot and heatmap function dont show the Foldchange even if i provide it as a named vector which has been sorted in decreasing order. The nodes are just coloured grey. i have included my code to generate the named numeric vector and the code for the cnetplot
fc_neuron <- Neuronal_treatment_dge[,9]
names(fc_neuron) <- as.character(Neuronal_treatment_dge[,7])
fc_neuron <- sort(fc_neuron, decreasing=T)
cnetplot(go_ora_neuron_simplified,colorEdge=T, node_label ='category', color_category="firebrick", cex_label_category = 0.5, layout='dh',foldChange = fc_neuron)
`Devika