Recreating the plot in R using GSEA desktop output

[mintang92]

Dear Yu lab,

I am trying to use gseaplot2 to recreate the figures created by the GSEA desktop to obtain better resolution. I ran the GSEA in the desktop version and used the generated xls. file as input for gseaplot2. It cannot be executed. Can you clarify the format of input data for gseaplot2 and what is the geneSetID it requires?

Thank you, Min

[huerqiang]

@mintang92 This tutorial may be helpful to you：https://yulab-smu.github.io/clusterProfiler-book/chapter12.html#ridgeline-plot-for-expression-distribution-of-gsea-result

[mintang92]

Thank you!