Open Asa12138 opened 1 year ago
。。。I spent lots of time and finally find the reason. because a special scientific name called Paracoccus, this genus have two totally different lineage from NCBI taxonomy.
d__Eukaryota | k__Metazoa | p__Arthropoda | c__Insecta | o__Hemiptera | f__Pseudococcidae | g__Paracoccus |
---|---|---|---|---|---|---|
d__Bacteria | k__Bacteria | p__Proteobacteria | c__Alphaproteobacteria | o__Rhodobacterales | f__Rhodobacteraceae | g__Paracoccus |
so this tree topology structure is not right, this is very strange.
I meet some errors when I plot a Phylogenetic tree with 3874 tips and 2850 internal nodes.
I use the latest version of R and ggtree, I also try different Platform and version but bugs still there.
I test this code:
It works well, so maybe not the number of tips but label of tree cause this problem?
Thanks if you can help me.