> library(ggtree)
ggtree v3.9.0 For help: https://yulab-smu.top/treedata-book/
If you use the ggtree package suite in published research, please cite
the appropriate paper(s):
Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam.
ggtree: an R package for visualization and annotation of phylogenetic
trees with their covariates and other associated data. Methods in
Ecology and Evolution. 2017, 8(1):28-36. doi:10.1111/2041-210X.12628
LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR
Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu. treeio: an R package
for phylogenetic tree input and output with richly annotated and
associated data. Molecular Biology and Evolution. 2020, 37(2):599-603.
doi: 10.1093/molbev/msz240
Guangchuang Yu. Data Integration, Manipulation and Visualization of
Phylogenetic Trees (1st edition). Chapman and Hall/CRC. 2022,
doi:10.1201/9781003279242
> example(td_filter)
td_flt> tree <- rtree(30)
td_flt> ## similar to 'ggtree(tree) + geom_tippoint()'
td_flt> ggtree(tree) + geom_point(data = td_filter(isTip))
Hit <Return> to see next plot:
! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
! # Invaild edge matrix for <phylo>. A <tbl_df> is returned.
>
After
> library(ggtree)
eggtree v3.9.0.001 For help:
https://yulab-smu.top/treedata-book/
If you use the ggtree package suite in published research, please cite
the appropriate paper(s):
Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam.
ggtree: an R package for visualization and annotation of phylogenetic
trees with their covariates and other associated data. Methods in
Ecology and Evolution. 2017, 8(1):28-36. doi:10.1111/2041-210X.12628
G Yu. Data Integration, Manipulation and Visualization of Phylogenetic
Trees (1st ed.). Chapman and Hall/CRC. 2022. ISBN: 9781032233574
Shuangbin Xu, Lin Li, Xiao Luo, Meijun Chen, Wenli Tang, Li Zhan, Zehan
Dai, Tommy T. Lam, Yi Guan, Guangchuang Yu. Ggtree: A serialized data
object for visualization of a phylogenetic tree and annotation data.
iMeta 2022, 1(4):e56. doi:10.1002/imt2.56
> example(td_filter)
td_flt> tree <- rtree(30)
td_flt> ## similar to 'ggtree(tree) + geom_tippoint()'
td_flt> ggtree(tree) + geom_point(data = td_filter(isTip))
Hit <Return> to see next plot:
>
The same to https://github.com/YuLab-SMU/treeio/pull/103
Before
After